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Bleadperl v5.19.6-188-g892089c breaks RVOSA/Bio-Phylo-0.56.tar.gz #13480

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p5pRT opened this issue Dec 19, 2013 · 8 comments
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Bleadperl v5.19.6-188-g892089c breaks RVOSA/Bio-Phylo-0.56.tar.gz #13480

p5pRT opened this issue Dec 19, 2013 · 8 comments

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@p5pRT
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p5pRT commented Dec 19, 2013

Migrated from rt.perl.org#120824 (status was 'resolved')

Searchable as RT120824$

@p5pRT
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p5pRT commented Dec 19, 2013

From @andk

git bisect


commit 892089c
Author​: Graham Knop <haarg@​haarg.org>
Date​: Wed Dec 4 05​:54​:02 2013 -0500

  make base.pm more strict about nonexistent module check

diagnostics


Note that the failure is only reproducable when both XML​::LibXML and
XML​::Twig are installed​:

http​://www.cpantesters.org/cpan/report/e008541c-675f-11e3-8dda-f464797cd0ea

perl -V


Summary of my perl5 (revision 5 version 19 subversion 7) configuration​:
  Commit id​: 892089c
  Platform​:
  osname=linux, osvers=3.10-3-amd64, archname=x86_64-linux
  uname='linux k83 3.10-3-amd64 #1 smp debian 3.10.11-1 (2013-09-10) x86_64 gnulinux '
  config_args='-Dprefix=/home/sand/src/perl/repoperls/installed-perls/perl/v5.19.6-188-g892089c/165a -Dmyhostname=k83 -Dinstallusrbinperl=n -Uversiononly -Dusedevel -des -Ui_db -Uuseithreads -Uuselongdouble -DDEBUGGING=-g'
  hint=recommended, useposix=true, d_sigaction=define
  useithreads=undef, usemultiplicity=undef
  useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
  use64bitint=define, use64bitall=define, uselongdouble=undef
  usemymalloc=n, bincompat5005=undef
  Compiler​:
  cc='cc', ccflags ='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64',
  optimize='-O2 -g',
  cppflags='-fno-strict-aliasing -pipe -fstack-protector -I/usr/local/include'
  ccversion='', gccversion='4.8.2', gccosandvers=''
  intsize=4, longsize=8, ptrsize=8, doublesize=8, byteorder=12345678
  d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
  ivtype='long', ivsize=8, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
  alignbytes=8, prototype=define
  Linker and Libraries​:
  ld='cc', ldflags =' -fstack-protector -L/usr/local/lib'
  libpth=/usr/local/lib /lib/x86_64-linux-gnu /lib/../lib /usr/lib/x86_64-linux-gnu /usr/lib/../lib /lib /usr/lib
  libs=-lnsl -lgdbm -ldb -ldl -lm -lcrypt -lutil -lc -lgdbm_compat
  perllibs=-lnsl -ldl -lm -lcrypt -lutil -lc
  libc=, so=so, useshrplib=false, libperl=libperl.a
  gnulibc_version='2.17'
  Dynamic Linking​:
  dlsrc=dl_dlopen.xs, dlext=so, d_dlsymun=undef, ccdlflags='-Wl,-E'
  cccdlflags='-fPIC', lddlflags='-shared -O2 -g -L/usr/local/lib -fstack-protector'

Characteristics of this binary (from libperl)​:
  Compile-time options​: HAS_TIMES PERLIO_LAYERS PERL_DONT_CREATE_GVSV
  PERL_HASH_FUNC_ONE_AT_A_TIME_HARD PERL_MALLOC_WRAP
  PERL_NEW_COPY_ON_WRITE PERL_PRESERVE_IVUV
  PERL_USE_DEVEL USE_64_BIT_ALL USE_64_BIT_INT
  USE_LARGE_FILES USE_LOCALE USE_LOCALE_COLLATE
  USE_LOCALE_CTYPE USE_LOCALE_NUMERIC USE_PERLIO
  USE_PERL_ATOF
  Built under linux
  Compiled at Dec 19 2013 09​:37​:03
  @​INC​:
  /home/sand/src/perl/repoperls/installed-perls/perl/v5.19.6-188-g892089c/165a/lib/site_perl/5.19.7/x86_64-linux
  /home/sand/src/perl/repoperls/installed-perls/perl/v5.19.6-188-g892089c/165a/lib/site_perl/5.19.7
  /home/sand/src/perl/repoperls/installed-perls/perl/v5.19.6-188-g892089c/165a/lib/5.19.7/x86_64-linux
  /home/sand/src/perl/repoperls/installed-perls/perl/v5.19.6-188-g892089c/165a/lib/5.19.7
  .

--
andreas

@p5pRT
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p5pRT commented Dec 21, 2013

From @andk

Also affected​:

NLNETLABS/Net-DNS-0.73.tar.gz
http​://www.cpantesters.org/cpan/report/026bfcc2-66cd-11e3-a4a9-0ff6bc322218

RIBASUSHI/DBIx-Class-0.08250.tar.gz
http​://www.cpantesters.org/cpan/report/b268437c-673d-11e3-b7bf-ec75797cd0ea

--
andreas

@p5pRT
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p5pRT commented Dec 24, 2013

From @andk

Also affected​:

JSIRACUSA/Rose-HTML-Objects-0.620.tar.gz
http​://www.cpantesters.org/cpan/report/37745361

Note that the breakage occurs as a consequence of the breakage of
NLNETLABS/Net-DNS-0.73.tar.gz but also in its own use of base.pm.

--
andreas

@p5pRT
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p5pRT commented Mar 5, 2014

From @tonycoz

On Thu Dec 19 00​:49​:13 2013, andreas.koenig.7os6VVqR@​franz.ak.mind.de wrote​:

git bisect
----------
commit 892089c
Author​: Graham Knop <haarg@​haarg.org>
Date​: Wed Dec 4 05​:54​:02 2013 -0500

make base.pm more strict about nonexistent module check

diagnostics
-----------
Note that the failure is only reproducable when both XML​::LibXML and
XML​::Twig are installed​:

I may have fixed this in 257518b.

The following distributions passed for me in blead​:

RVOSA/Bio-Phylo-0.56.tar.gz (with XML​::Twig and XML​::LibXML installed)
NLNETLABS/Net-DNS-0.73.tar.gz
JSIRACUSA/Rose-HTML-Objects-0.620.tar.gz

The following failed​:

RIBASUSHI/DBIx-Class-0.08250.tar.gz

but the failure doesn't match that in the cpantesters report​:

t/resultset/update_delete.t ......................... 1/?
# Failed test 'Correct update-SQL with multicolumn in support'
# at t/resultset/update_delete.t line 122.
# SQL expressions differ
# got​: UPDATE fourkeys SET read_count = read_count + 1 WHERE ( ( foo, bar, hello, goodbye ) IN ( (SELECT me.foo, me.bar, me.hello, me.goodbye FROM fourkeys me LEFT JOIN fourkeys_to_twokeys fourkeys_to_twokeys ON ( fourkeys_to_twokeys.f_bar = me.bar AND fourkeys_to_twokeys.f_foo = me.foo AND fourkeys_to_twokeys.f_goodbye = me.goodbye AND fourkeys_to_twokeys.f_hello = me.hello ) WHERE ( ( fourkeys_to_twokeys.pilot_sequence != ? AND ( ( bar = ? OR bar = ? ) AND ( foo = ? OR foo = ? ) AND ( goodbye = ? OR goodbye = ? ) AND ( hello = ? OR hello = ? ) AND sensors != ? ) ) )) ) )
# expected​: UPDATE fourkeys
# SET read_count = read_count + 1
# WHERE (
# (foo, bar, hello, goodbye) IN (
# SELECT me.foo, me.bar, me.hello, me.goodbye
# FROM fourkeys me
# LEFT JOIN fourkeys_to_twokeys fourkeys_to_twokeys ON
# fourkeys_to_twokeys.f_bar = me.bar
# AND fourkeys_to_twokeys.f_foo = me.foo
# AND fourkeys_to_twokeys.f_goodbye = me.goodbye
# AND fourkeys_to_twokeys.f_hello = me.hello
# WHERE fourkeys_to_twokeys.pilot_sequence != ? AND ( bar = ? OR bar = ? ) AND ( foo = ? OR foo = ? ) AND ( goodbye = ? OR goodbye = ? ) AND ( hello = ? OR hello = ? ) AND sensors != ?
# )
# )
#
# differing in :
# OP [-PAREN] != [SELECT] in
# left​: ( SELECT me.foo, me.bar, me.hello, me.goodbye FROM fourkeys me LEFT JOIN fourkeys_to_twokeys fourkeys_to_twokeys ON fourkeys_to_twokeys.f_bar = me.bar AND fourkeys_to_twokeys.f_foo = me.foo AND fourkeys_to_twokeys.f_goodbye = me.goodbye AND fourkeys_to_twokeys.f_hello = me.hello WHERE fourkeys_to_twokeys.pilot_sequence != ? AND ( bar = ? OR bar = ? ) AND ( foo = ? OR foo = ? ) AND ( goodbye = ? OR goodbye = ? ) AND ( hello = ? OR hello = ? ) AND sensors != ? )
# right​: SELECT me.foo, me.bar, me.hello, me.goodbye
#
# Looks like you failed 1 test of 32.
t/resultset/update_delete.t ......................... Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/32 subtests

and seems unrelated to the base.pm changes.

I think this can be closed.

Tony

@p5pRT
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p5pRT commented Mar 5, 2014

The RT System itself - Status changed from 'new' to 'open'

@p5pRT
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p5pRT commented Mar 5, 2014

From zefram@fysh.org

Tony Cook via RT wrote​:

The following failed​:

RIBASUSHI/DBIx-Class-0.08250.tar.gz
...
and seems unrelated to the base.pm changes.

That's [rt.cpan.org #92331], is indeed unrelated to base.pm, and was
fixed in DBIx-Class-0.08260.

-zefram

@p5pRT
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p5pRT commented Mar 6, 2014

From @tonycoz

On Wed Mar 05 02​:25​:14 2014, zefram@​fysh.org wrote​:

Tony Cook via RT wrote​:

The following failed​:

RIBASUSHI/DBIx-Class-0.08250.tar.gz
...
and seems unrelated to the base.pm changes.

That's [rt.cpan.org #92331], is indeed unrelated to base.pm, and was
fixed in DBIx-Class-0.08260.

Thanks, so closing this ticket.

Tony

@p5pRT
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p5pRT commented Mar 6, 2014

@tonycoz - Status changed from 'open' to 'resolved'

@p5pRT p5pRT closed this as completed Mar 6, 2014
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